Kallisto is an RNA-seq quantification program. It quantifies abundances of transcripts from RNA-seq data and uses psedoalignment to determine the compatibility of reads with targets, without needing alignment.
Availability and Restrictions
Versions
Kallisto is available on the Owens Clusters. The versions currently available at OSC are:
| Version | Owens |
|---|---|
| 0.43.1 | X* |
* Current Default Version
You can use module spider kallisto to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Access
Kallisto is available to all OSC users. If you have any questions, please contact OSC Help.
Publisher/Vendor/Repository and License Type
Nicolas Bray et al., Open source
Usage
Usage on Owens
Set-up
To configure your enviorment for use of Salmon, use command module load kallisto. This will load the default version.
Further Reading
Supercomputer:
Fields of Science:
