Gurobi is a mathematical optimization solver that supports a variety of programming and modeling languages.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
| Version | Owens | Cardinal |
|---|---|---|
| 8.1.1 | X* | |
| 9.1.2 | X | |
| 10.0.1 | X | X |
You can use module spider gurobi to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Access
Gurobi is available to academic OSC users with proper validation. In order to obtain validation, please contact OSC Help for further instruction.
Publisher/Vendor/Repository and License Type
Gurobi Optimization, LLC/ Free academic floating license
Usage
Usage on Owens
Set-up
module load gurobi. The default version will be loaded. To select a particular Gurobi version, use module load gurobi/version. For example, use module load gurobi/8.1.1 to load Gurobi 8.1.1.You may use Gurobi in Python or Matlab. In either case, you also need to load our gurobi module first in order to use the central license. So, before you use it in Python or Matlab, use module load gurobi.
In addition, if you are using Gurobi for Matlab then you will need to setup Gurobi inside Matlab: launch matlab; change to the gurobi directory using the commad cd /usr/local/gurobi/VERSION/matlab (where VERSION is the version of Gurobi you are using); and execute the command gurobi_setup.
