MRIQC is a program that provides automatic prediction of quality and visual reporting of MRI scans.
Availability and Restrictions
Versions
The following versions are available on OSC clusters:
| Version | Pitzer | Cardinal |
|---|---|---|
| 0.16.1 | X* | |
| 23.1.0rc0 | X | |
| 24.1.0 | X* |
You can use module spider mriqc to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Access
MRIQC is available to all OSC users. If you have any questions, please contact OSC Help.
Publisher/Vendor/Repository and License Type
MRIQC uses the 3-clause BSD license; the full license is in the file LICENSE in the mriqc distribution. Open-source.
All trademarks referenced herein are property of their respective holders.
Copyright (c) 2015-2017, the mriqc developers and the CRN. All rights reserved.
Usage
Usage on Pitzer
Set-up
To configure your environment for use of mriqc, run the following command: module load mriqc. The default version will be loaded. To select a particular MRIQC version, use module load mriqc/version. For example, use module load mriqc/0.16.1 to load MRIQC 0.16.1.
MRIQC is installed in a singularity container. MRIQC_IMG environment variable contains the container image file path. So, an example usage would be
module load mriqc singularity exec $MRIQC_IMG mriqc --version
For more information about singularity usages, please read OSC singularity page.
