StringTie assembles aligned RNA-Seq reads into transcripts that represent splice variants in RNA-Seq samples.
Availability and Restrictions
Versions
StringTie is available on the Owens Cluster. The versions currently available at OSC are:
| Version | Owens |
|---|---|
| 1.3.3b | X* |
* Current Default Version
You can use module spider stringtieto view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Access
StringTie is available to all OSC users. If you have any questions, please contact OSC Help.
Publisher/Vendor/Repository and License Type
https://ccb.jhu.edu/software/stringtie/, Open source
Usage
Usage on Owens
Set-up
To configure your enviorment for use of StringTie, use command module load stringtie. This will load the default version.
Further Reading
Supercomputer:
Fields of Science:
