HISAT2 is a graph-based alignment program that maps DNA and RNA sequencing reads to a population of human genomes.
Availability and Restrictions
Versions
HISAT2 is available on the Owens Cluster. The versions currently available at OSC are:
| Version | Owens | Pitzer |
|---|---|---|
| 2.1.0 | X* | X* |
* Current Default Version
You can use module spider hisat2 to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Access
HISAT2 is available to all OSC users. If you have any questions, please contact OSC Help.
Publisher/Vendor/Repository and License Type
https://ccb.jhu.edu/software/hisat2, Open source
Usage
Usage on Owens and Pitzer
Set-up
To configure your enviorment for use of HISAT2, use command module load hisat2. This will load the default version.
Further Reading
Fields of Science:
