Salmon is a tool for quantifying the expression of transcripts using RNA-seq data.
Availability and Restrictions
Versions
Salmon is available on the OSC Clusters. The versions currently available at OSC are:
| Version | Pitzer |
|---|---|
| 1.2.1 | X* |
| 1.4.0 | X |
| 1.10.0 | X |
* Current default version
You can use module spider salmonto view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Access
Salmon is available to all OSC users. If you have any questions, please contact OSC Help.
Publisher/Vendor/Repository and License Type
Patro, R. et al., Freeware
Usage
Usage on Pitzer
Set-up
To configure your enviorment for use of Salmon, use command module load salmon. This will load the default version.
Further Reading
Supercomputer:
