STAR-Fusion is a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). STAR-Fusion uses the STAR aligner to identify candidate fusion transcripts supported by Illumina reads. STAR-Fusion further processes the output generated by the STAR aligner to map junction reads and spanning reads to a reference annotation set.
Availability and Restrictions
Versions
The following versions of STAR-Fusion are available on OSC clusters:
| Version | Owens |
|---|---|
| 0.7.0 | X* |
| 1.4.0 | X |
* Current default version
You can use module spider star-fusion to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Access
STAR-Fusion is available to all OSC users. If you have any questions, please contact OSC Help.
Publisher/Vendor/Repository and License Type
Broad Institute, Open source
Usage
Usage on Owens
Set-up
To configure your environment for use of STAR-Fusion, run the following command:
module load star-fusion. The default version will be loaded. To select a particular STAR-Fusion version, use module load star-fusion/version. For example, use module load star-fusion/0.7.0 to load STAR-Fusion 0.7.0.Further Reading
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