Salmon is a tool for quantifying the expression of transcripts using RNA-seq data.
Salmon is available on the Owens Cluster. The versions currently available at OSC are:
Version | Owens | Pitzer |
---|---|---|
0.8.2 | X* | |
1.0.0 | X | |
1.2.1 | X | X* |
1.4.0 | X | |
1.10.0 | X |
You can use module spider salmon
to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Salmon is available to all OSC users. If you have any questions, please contact OSC Help.
Patro, R. et al., Freeware
To configure your enviorment for use of Salmon, use command module load salmon
. This will load the default version.