The XCP imaging pipeline (XCP system) is a free, open-source software package for processing of multimodal neuroimages. The XCP system uses a modular design to deploy analytic routines from leading MRI analysis platforms, including FSL, AFNI, and ANTs.
Availability and Restrictions
Versions
xcpEngine is available on Pitzer cluster. These are the versions currently available:
| Version | Pitzer | Notes |
|---|---|---|
| 1.2.3 | X* |
You can use module spider xcpengine to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Access
xcpEngine is available to all OSC users.
Publisher/Vendor/Repository and License Type
xcpEngine is free and open source.
© Copyright 2019, Rastko Ciric, Adon F. G. Rosen, Guray Erus, Matthew Cieslak, Azeez Adebimpe, Philip A. Cook, Danielle S. Bassett, Christos Davatzikos, Daniel H. Wolf, Theodore D. Satterthwaite
Usage
Usage on Pitzer
Set-up
To configure your environment for use of xcpEngine, run the following command: module load xcpengine. The default version will be loaded. To select a particular version, use module load xcpengine/version. For example, use module load xcpengine/1.2.3 to load xcpEngine 1.2.3.
xcpEngine is installed in a singularity container. XCPENGINE_IMG environment variable contains the container image file path. So, an example usage would be
module load xcpengine singularity run $XCPENGINE_IMG -h
For more information about singularity usages, please read OSC singularity page, and you may find useful information about xcpEngine usages with the container from here.
