FSL is a library of tools for analyzing FMRI, MRI and DTI brain imaging data.
Availability and Restrictions
Versions
The following versions of FSL are available on OSC clusters:
| Version | Owens | Pitzer | Cardinal |
|---|---|---|---|
| 5.0.10 |
X* |
||
| 6.0.4 | X | X | |
| 6.0.7.13 | X | X |
You can use module spider fsl to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Access
FSL is available to academic OSC users. Please review the license agreement carefully before use. If you have any questions, please contact OSC Help.
Publisher/Vendor/Repository and License Type
Analysis Group, University of Oxford/ freeware
Usage
Usage on Owens and Pitzer
Set-up
Configure your environment for use of FSL with module load fsl. This will load the default version.
Using FSL GUI
Access the FSL GUI with command for bash
source $FSLDIR/etc/fslconf/fsl.sh fsl
For csh, one can use
source $FSLDIR/etc/fslconf/fsl.csh fsl
This will bring up a menu of all FSL tools. For information on individual FSL tools see FSL Overview page.
Using BASIL GUI
module load fsl/6.0.4 source $FSLDIR/etc/fslconf/fsl.sh asl_gui --matplotlib
For more information, please visit https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/BASIL.
