bcftools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF.
Availability and Restrictions
Versions
The following versions of bcftools are available on OSC clusters:
| Version | Owens | Pitzer |
|---|---|---|
| 1.3.1 | X* | |
| 1.9 | X* | |
| 1.16 | X | X |
* Current default version
You can use module spider bcftools to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Access
bcftools is available to all OSC users. If you have any questions, please contact OSC Help.
Publisher/Vendor/Repository and License Type
Genome Research Ltd., Open source
Usage
Usage on Owens
Set-up
To configure your environment for use of bcftools, run the following command:
module load bcftools. The default version will be loaded. To select a particular bcftools version, use module load bcftools/version. For example, use module load bcftools/1.3.1 to load bcftools 1.3.1.Usage on Pitzer
Set-up
To configure your environment for use of bcftools, run the following command:
module load bcftools. The default version will be loaded.Further Reading
Service:
Fields of Science:
