VMD
VMD is a visulaization program for the display and analysis of molecular systems.
Availability and Restrictions
Versions
The following versions of VMD are available on OSC clusters:
Cardinal
Abaqus
Abaqus will be fully migrated from the Owens cluster to the Cardinal cluster on December 17, 2024. After this date, Abaqus will NO longer be accessible on Owens.
ABAQUS is a finite element analysis program owned and supported by SIMULIA, the Dassault Systèmes brand for Realistic Simulation.
FastQC
FastQC provides quality control checks of high throughput sequence data that identify areas of the data that may cause problems during further analysis.
Cufflinks
Cufflinks is a program that analyzes RNA -Seq samples. It assembles aligned RNA-Seq reads into a set of transcripts, then inspects the transcripts to estimate abundances and test for differential expression and regulation in the RNA-Seq reads.
HTSlib
HTSlib is a C library used for reading and writing high-throughput sequencing data.
FreeSurfer
FreeSurfer is a software package used to anaylze nueroimaging data.
Availability & Restrictions
Versions
The following versions of FreeSurfer are available on OSC clusters:
FSL
FSL is a library of tools for analyzing FMRI, MRI and DTI brain imaging data.
Availability and Restrictions
Versions
The following versions of FSL are available on OSC clusters:
VirtualGL
VirtualGL allows OpenGL applications to run with 3D hardware accerlation.
Availability & Restrictions
Versions
The following versions of VirtualGL are available on OSC clusters:
Julia
From julialang.org:
"Julia is a high-level, high-performance dynamic programming language for numerical computing. It provides a sophisticated compiler, distributed parallel execution, numerical accuracy, and an extensive mathematical function library. Julia’s Base library, largely written in Julia itself, also integrates mature, best-of-breed open source C and Fortran libraries for linear algebra, random number generation, signal processing, and string processing. In addition, the Julia developer community is contributing a number of external packages through Julia’s built-in package manager at a rapid pace. IJulia, a collaboration between the Jupyter and Julia communities, provides a powerful browser-based graphical notebook interface to Julia."
Darshan
Darshan is a lightweight "scalable HPC I/O characterization tool
Availability and Restrictions
Versions
The following versions of Darshan are available on OSC clusters:
