The Cardinal cluster supports C, C++, and Fortran programming languages. The available compiler suites include Intel, oneAPI, and GCC. By default, the Intel development toolchain is loaded. The table below lists the compiler commands and recommended options for compiling serial programs. For more details and best practices, please refer to our compilation guide.
A PyTorch 2.4.0 conda environment is now available. Usage via: module load pytorch/2.4.0 See OSC PyTorch software page for more details.
Desmond 2023-4 has been installed on Cardinal and Owens. Note that the vendor has changed their version syntax from a dot to a dash, but we have kept the dot syntax for our modules. These are GPU enabled installations. Usage is via the module desmond/2023.4.
These are the public key fingerprints for Cardinal:
cardinal: ssh_host_rsa_key.pub = 73:f2:07:6c:76:b4:68:49:86:ed:ef:a3:55:90:58:1b
cardinal: ssh_host_ed25519_key.pub = 93:76:68:f0:be:f1:4a:89:30:e2:86:27:1e:64:9c:09
cardinal: ssh_host_ecdsa_key.pub = e0:83:14:8f:d4:c3:c5:6c:c6:b6:0a:f7:df:bc:e9:2e
sbatch (instead of qsub) command to submit jobs. Refer to the Slurm migration page to understand how to use Slurm. It is strongly suggested to consider the memory use to the available per-core memory when users request OSC resources for their jobs.
MVAPICH is a standard library for performing parallel processing using a distributed-memory model.
AutoDock is a a suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure. AutoDock has applications in X-ray crystallography, structure-based drug design, lead optimization, etc.
Nextflow is a workflow system for creating scalable, portable, and reproducible workflows. Nextflow is based on the dataflow programming model which simplifies complex distributed pipelines.
