Pitzer

Cell Ranger

Cell Ranger is a cell analysis library for generate feature-barcode matrices, perform Analysis for RNA samples. Cell Ranger works in pipelines for it's RNA  sequencing analysis which allows it to: process raw sequencing output, read alignment, generate gene-cell matrices, and can perform downstream analyses such as clustering and gene expression analysis.

System Downtime June 21, 2022

A downtime for all OSC HPC systems is scheduled from 7 a.m. to 9 p.m., Tuesday, June 21, 2022. The downtime will affect the Pitzer and Owens Clusters, web portals, and HPC file servers. Client Portal (my.osc.edu) and state-wide licenses will be available during the downtime. In preparation for the downtime, the batch scheduler will begin holding jobs that cannot be completed before 7 a.m., June 21, 2022. Jobs that are not started on clusters will be held until after the downtime and then started once the system is returned to production status.

LAMMPS Stable release 29 September 2021 with Update 3 (24 March 2022) is available

Date: 
Tuesday, May 3, 2022 - 5:15pm
System(s): 
Owens
Pitzer

LAMMPS stable version 29Sep2021.3 has been installed on Pitzer with Intel plus MVAPICH2 and GNU plus OpenMPI and on Owens with Intel plus MVAPICH2.  These are GPU enabled installations.  Usage is via the module lammps/29Sep2021.3.  For details on available packages, example batch scripts, and help loading an installation, use the command:  "module spider lammps/29Sep2021.3".

System Downtime Mar 22, 2022

A downtime for all OSC HPC systems is scheduled from 7 a.m. to 9 p.m., Tuesday, March 22, 2022. The downtime will affect the Pitzer and Owens Clusters, web portals, and HPC file servers. Client Portal (my.osc.edu) and state-wide licenses will be available during the downtime. In preparation for the downtime, the batch scheduler will begin holding jobs that cannot be completed before 7 a.m., March 22, 2022.

Pages