Pitzer
Texlive
TeX Live is a straightforward way to get up and running with the TeX document production system. It provides a comprehensive TeX system with binaries for most flavors of Unix, including GNU/Linux, macOS, and also Windows. It includes all the major TeX-related programs, macro pacakges, and fonts that are free software, including support for many languages around the world.
Availability and Restrictions
Versions
The following versions are available on OSC clusters:
HOWTO: Use Extensions with JupyterLab
JupyterLab stores the main build of JupyterLab with associated data, including extensions in Application Directory. The default Application Directory is the JupyterLab installation directory where is read-only for OSC users. Unlike Jupyter Notebook, JupyterLab cannot accommodate multiple paths for extensions management. Therefore we set the user's home directory for Application Directory so as to allow user to manage extensions.
Rolling reboots on owens and pitzer starting 26 July 2021
We will have rolling reboots of Owens and Pitzer cluster, including login and compute nodes, starting from 9am on July 26, 2021. The rolling reboot is for urgent security updates. The rolling reboots won't affect any running jobs, but users may experience longer queue wait time than usual on the cluster. User will also expect about a 10 minute outage of login nodes during the reboot of login nodes. If there are interactive jobs started from a login node and that login node is rebooted, then the job will be killed.
Scipion 3.0.8 available on Pitzer
Date:
Monday, July 19, 2021 - 3:30pm
System(s):
Scipion version 3.0.8 is now available on Pitzer cluster.
Please review your usage of /fs/ess
Recent improvements to a routine OSC accounting process resulted in larger adjustments to file counts and quota usages than anticipated for some accounts. The updated metrics are more accurate but some users may now have less free space than expected. Please review your usage closely and, if necessary, remove unneeded data or request a quota expansion via OSCHelp to avoid exhausting your available space.
Scipion
SCIPION is an image processing framework fo robtaining 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents a unified interface for both biologists and developers. Scipion allows you to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on.
Availability and Restrictions
Versions
The following versions are available on OSC clusters:
Submit FY22 budget on July 1, 2021
Due to an error in the OSC Client Portal (my.osc.edu), PIs will not be able to submit an FY22 budget on June 30, 2021. Please create a new current budget on or after July 1st, 2021 to reactivate your project. We apologize for the inconvenience.
