VisIt is an Open Source, interactive, scalable, visualization, animation and analysis tool for visualizing data defined on two- and three-dimensional structured and unstructured meshes.
STAR 2.7.9a has been installed with gnu/10.3.0 compilers on Owens and Pitzer. Usage is via the module star/2.7.9a. For help loading an installation, use the command: "module spider star/2.7.9a". That command also emits information on the available executables and installation details.
Quantum Espresso 6.7 is now available on Onwe and Pitzer clusters; visit https://www.osc.edu/resources/available_software/software_list/quantum_e... for usage.
FreeSurfer version 7.2.0 is now available on Owens and Pitzer clusters. Usage via module load freesurfer/7.2.0. Visit https://www.osc.edu/resources/available_software/software_list/freesurfer for more details on configuring your environment.
HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMS). HMMER is designed to detect remote homologs as sensitively as possible, relying on the strength of its underlying probability models.
HMMER is available on the OSC clusters. These are the versions currently available:
AlphaFold version 2.0.0 is now available on Pitzer cluster; usage via module load alphafold.
AlphaFold is a software package that provides an implementation of the inference pipeline of AlphaFold v2.0. This is a completely new model that was entered in CASP14 and pusblished in Nature.
