Neuropointillist is an in-development R package which defines functions to help scientists to run voxel-wise models using R neuroimaging data.
The following versions are available on OSC clusters:
The XCP imaging pipeline (XCP system) is a free, open-source software package for processing of multimodal neuroimages. The XCP system uses a modular design to deploy analytic routines from leading MRI analysis platforms, including FSL, AFNI, and ANTs.
xcpEngine is available on Pitzer cluster. These are the versions currently available:
Connectome is an open-source visualization and discovery tool used to explore data generated by the Human Connectome Project. The distribution includes wb_view, a GUI-based visualization platform, and wb_command, a command-line program for performing a variety of algorithmic tasks using volume, surface, and grayordinate data.
The following versions are available on OSC clusters:
DSI Studio is a tractography software tool that maps brain connections and correlates findings with neuropsychological disorders. It is a collective implementation of several diffusion MRI methods, including diffusion tensor imaging (DTI), generalized q-sampling imaging (GQI), q-space diffeomorphic reconstruction (QSDR), diffusion MRI connectometry, and generalized deterministic fiber tracking.
MRIQC is a program that provides automatic prediction of quality and visual reporting of MRI scans.
The following versions are available on OSC clusters:
