ondemand outage
OSC is currently troubleshooting issues with ondemand.osc.edu
ondemand.osc.edu will be non-functional until we resolve the issues.
Contact oschelp@osc.edu with questions.
Ascend
System Downtime Mar 22, 2022
A downtime for all OSC HPC systems is scheduled from 7 a.m. to 9 p.m., Tuesday, March 22, 2022. The downtime will affect the Pitzer and Owens Clusters, web portals, and HPC file servers. Client Portal (my.osc.edu) and state-wide licenses will be available during the downtime.
In preparation for the downtime, the batch scheduler will begin holding jobs that cannot be completed before 7 a.m., March 22, 2022.
Test MOTD
Test MOTD for GPU22
OpenCV
OpenCV is an open-source library that includes several hundreds of computer vision algorithms.
VisIt
VisIt is an Open Source, interactive, scalable, visualization, animation and analysis tool for visualizing data defined on two- and three-dimensional structured and unstructured meshes.
AlphaFold
AlphaFold is a software package that provides an implementation of the inference pipeline of AlphaFold v2.0. This is a completely new model that was entered in CASP14 and pusblished in Nature.
HOWTO: Use a Conda/Virtual Environment With Jupyter
The IPython kernel for a Conda/virtual environment must be installed on Jupyter prior to use. This tutorial will walk you though the installation and setup procedure.
Texlive
TeX Live is a straightforward way to get up and running with the TeX document production system. It provides a comprehensive TeX system with binaries for most flavors of Unix, including GNU/Linux, macOS, and also Windows. It includes all the major TeX-related programs, macro pacakges, and fonts that are free software, including support for many languages around the world.
Availability and Restrictions
Versions
The following versions are available on OSC clusters:
Scipion
SCIPION is an image processing framework fo robtaining 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents a unified interface for both biologists and developers. Scipion allows you to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on.
AFNI
AFNI (Analysis of Functional Neuro Images) is a leading software suite of C, Python, and R programs and shell scripst primarily developed for the analysis and display of multiple MRI modalities: anatomical, functional MRI (FMRI) and diffusion wieghted (DW) data. It is freely available (both as open source code and as precompiled binaries) for research purposes.
Availability and Restrictions
Versions
The following versions are available on OSC clusters:
