FastQC provides quality control checks of high throughput sequence data that identify areas of the data that may cause problems during further analysis.
FastQC is available on the Owens cluster. The versions currently available at OSC are:
| Version | Owens | Pitzer |
|---|---|---|
| 0.11.5 | X* | |
| 0.11.7 | X | |
| 0.11.8 | X* |
You can use module spider fastqc to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
FastQC is available to all OSC users. If you have any questions, please contact OSC Help.
Babraham Bioinformatics, Open source
To configure your enviorment for use of FastQC, use command module load fastqc. This will load the default version.
To configure your enviorment for use of FastQC, use command module load fastqc. This will load the default version.