CMake
CMake is a family of compilation tools that can be used to build, test and package software.
Availability and Restrictions
Versions
The current versions of CMake available at OSC are:
Pitzer
Account Consolidation Guide
Initial account consolidation took place during the July 17th, 2018 downtime.
Please contact OSC Help if you need further information.
Single Account / Multiple Projects
Scientific Database List
This page provides a list of the scientific database available at OSC.
VMD
VMD is a visulaization program for the display and analysis of molecular systems.
Availability and Restrictions
Versions
The following versions of VMD are available on OSC clusters:
ARM DDT
Arm DDT is a graphical debugger for HPC applications. It supports pthreads, OpenMP, or MPI code on CPU, GPU, and MIC based architectures.
Availability & Restrictions
Versions
The Arm DDT versions currently available at OSC are:
FastQC
FastQC provides quality control checks of high throughput sequence data that identify areas of the data that may cause problems during further analysis.
Perl
Perl is a family of programming languages.
HISAT2
HISAT2 is a graph-based alignment program that maps DNA and RNA sequencing reads to a population of human genomes.
TAU Commander
TAU Commander is a user interface for the TAU Performance System, a set of tools for analyizing the performance of parallel programs.
Salmon
Salmon is a tool for quantifying the expression of transcripts using RNA-seq data.
