Jmol is a simple molecular visualization program. It can read many file formats and can write various formats. Animations of normal modes and simulations are implemented. Jmol is an OpenScience Java application.
Availability & Restrictions
Jmol is available to all OSC users without restirction.
The following versions of Jmol are available on OSC systems:
Jmol is best executed locally. Thus, we recommend downloading the latest version from http://jmol.sourceforge.net/download/. The installation process is trivial.
To setup Glenn for use of Jmol, run the following command:
module load jmol
To execute Jmol, simply run the jmol binary with an optional input file on the command line:
Jmol should be executed interactively.