Bioinformatics Publications, Presentations and Posters

“Field Programmable Gate Arrays: Power In Future HPC Systems”, Keynote Speaker, Reconfigurable Systems Summer Institute, Champaign, IL, July 2005

“Coiled-coil Protein Composition of 22 Proteomes – Differences and Common Themes in Subcellular Infrastructure and Traffic Control”, A. Rose, S. Schraegle, E. Stahlberg, I. Meier, BMC Evolutionary Biology, November 16, 2005, 5:66

“Accelerated Biological Meta-Data Generation and Indexing on the Cray XD1”, E. Stahlberg, J. Fernando, J. Doak, K. Wohlever, Cray Users Group Conference, Albuquerque, NM, May 15, 2005

“Integrating FPGA Technology and Database Management Systems on Solaris Systems”, D. Ryle, D. Popig, E. Stahlberg, Sun Users Performance Group Conference, Arlington, VA, April 18, 2005

“Compilation of mRNA Polyadenylation Signals in Arabidopsis Revealed a New Signal Element and Potential Secondary Structures”, J. Loke, E. Stahlberg, D. Strenski, B. Haas, P. Wood, Q. Li, accepted for publication Plant Physiology, January 2005.

“Storage, Sharing and Safeguards: Three S’s for Knowledge Management”, Invited Speaker, Integrating Knowledge in the Life Science Product Life Cycle virtual conference, October 2004.

“Life Science Research at OSC: Proving Ground for Integrated Computational Biology Research and Applications”, Invited Speaker, IDC HPC Users Conference, Tuscon, AZ, September 21, 2004.

“Network Analysis Using Transitive Closure: New Methods for Exploring Networks”, D. Dougherty, W. Sadee, E. Stahlberg, Journal of Statistical Computation and Simulation. Submitted for publication June 2004.

“Comparative Sequence Analysis for SAGE (Serial Analysis of Gene Expression) using CBL and PCBL Libraries”, M. Gowda, G. Wang, J. Doak, S. Manikantan, E. Stahlberg, Proceedings of the 46th CUG Conference, Knoxville, Tennessee, May 2004

“Genome-Wide Identification of Arabidopsis Coiled-Coil Proteins and Establishment of the ARABI-COIL Database”, A. Rose, S. Manikantan, S. J. Schraegle, M. A. Maloy, E. A. Stahlberg and I. Meier, Plant Physiology, March 2004, Vol. 134, pp. 927-939

“Genome-wide Compilation and Probabilistic Prediction of mRNA Polyadenylation Signals in Arabidopsis Using Advanced Searching Technologies”, Q. Li, J. C. H. Loke, E. Stahlberg, D. Strenski, The 45th CUG Conference, Columbus, Ohio, May 2003

"Improving performance of multiple sequence alignment analysis in multi-client environments,” U. Catalyurek, E. Stahlberg, R. Ferreira, T. Kurc, and J. Saltz, Proceedings of 16th International Parallel and Distributed Processing Symposium (IPDPS), First Workshop on High Performance Computational Biology, Fort Lauderdale, Florida, April 2002.

“Integrating Heterogenous Enterprise Bioinformatics Resources with Sun Grid Engine and Sun Grid Portal Technology”, E. Stahlberg, Proceedings Sun Users Performance Group, September 16-20, 2002

“Guidelines for Porting Scientific Software to Intel SMPs Under Windows/NT”, R. Kuhn, E. Stahlberg, Scientific Computing and Automation, November 1997, p. 31.

“Multi-Architecture Parallel Computing: Applications in Chemistry”, Invited Speaker, International Conference on Parallel Computing, Minneapolis, MN, October 3-4, 1996.

“Chemical Structure of Urea in Water”, C. Lee, E. Stahlberg, G. Fitzgerald, The Journal of Physical Chemistry, 99, p 17737, 1995.

“Atmospheric Chemistry of CF3OH: Is Photolysis Important?”, W.F. Schneider, T. J. Wallington, K. Minshwaner, E. A. Stahlberg, Environmental Science and Technology, 28, p. 247, 1995

“Density Functional Application in Parallel on the Cray T3D”, E. A. Stahlberg, G. Fitzgerald, M. S. Stave, American Chemical Society National Convention, Anaheim, CA, April 1995

“Parallel DFT: Algorithms and Applications”, International Symposium: Computational Chemistry on Supercomputers, E. A. Stahlberg, Centre d’Etudes Nucleaires de Grenoble, Grenoble, France, March 8-9, 1995