metilene is a software tool to annotate differentally methylated regions and differentially methylated CpG sites.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
| Version | Owens | Pitzer |
|---|---|---|
| 0.2-7 | X* | X* |
* Current default version
You can use module spider metilene to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Access
metilene is available to all OSC users. If you have any questions, please contact OSC Help.
Publisher/Vendor/Repository and License Type
Frank Jühling, Helene Kretzmer, Stephan H. Bernhart, Christian Otto, Peter F. Stadler & Steve Hoffmann, GNU GPL v2.0 license
Usage
Usage on Owens
Set-up
To configure your environment for use of metilene, run the following command:
module load metilene. The default version will be loaded. To select a particular metileneversion, use module load metilene/version. For example, use module load metilene/0.2-7 to load metilene 0.2-7.Usage on Pitzer
Set-up
To configure your environment for use of metilene, run the following command:
module load metilene. The default version will be loaded. To select a particular metileneversion, use module load metilene/version. For example, use module load metilene/0.2-7 to load metilene 0.2-7.Further Reading
Service:
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