Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step.
The following versions of bedtools are available on OSC clusters:
| Version | Pitzer |
|---|---|
| 0.22.1 | X* |
| 0.22.3 | X |
You can use module spider bismark to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Bismark is available to all OSC users. If you have any questions, please contact OSC Help.
Babraham Bioinformatics, GNU GPL v3
module load bismark. The default version will be loaded. To select a particular Bismark version, use module load bismark/version. For example, use module load bismark/0.22.1 to load Bismark 0.22.1.