HTSlib is a C library used for reading and writing high-throughput sequencing data. HTSlib is the core library used by SAMtools. HTSlib also provides the bgzip, htsfile, and tabix utilities.
The versions of HTSlib currently available at OSC are:
| Version | Owens | Pitzer | Cardinal |
|---|---|---|---|
| 1.6 | X* | ||
| 1.11 | X* | ||
| 1.16 | X | X | |
| 1.20 | X* |
You can use module spider htslib to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
HTSlib is available to all OSC users.
Genome Research Ltd., Open source
To configure your enviorment for use of HTSlib, use command module load htslib. This will load the default version.