Bioperl offers a set of perl modules which can be used for sequence manipulation. Knowledge of PERL programming is required.
Bioperl is available without restriction to all OSC users.
The following versions of Bioperl are available:
This is an example of how to use bioperl and access the sequence package on the Oakley Cluster.
use lib '/usr/local/bioperl/1.6.1/lib/perl5/' use Bio::Seq;
This is an example of how to use bioperl and access the sequence package on the Glenn Cluster.
use lib '/usr/local/biosoftw/bioperl-1.6.1/lib/perl5/' use Bio::Seq;